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https://github.com/MillironX/nf-core_modules.git
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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
17 lines
637 B
YAML
17 lines
637 B
YAML
- name: gatk4 fastqtosam test_gatk4_fastqtosam_single_end
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command: nextflow run tests/modules/gatk4/fastqtosam -entry test_gatk4_fastqtosam_single_end -c tests/config/nextflow.config
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tags:
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- gatk4/fastqtosam
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- gatk4
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files:
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- path: output/gatk4/test.bam
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md5sum: 4967100b2e4912c0e4ce0976d946bafb
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- name: gatk4 fastqtosam test_gatk4_fastqtosam_paired_end
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command: nextflow run tests/modules/gatk4/fastqtosam -entry test_gatk4_fastqtosam_paired_end -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/fastqtosam
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files:
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- path: output/gatk4/test.bam
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md5sum: 4967100b2e4912c0e4ce0976d946bafb
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