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ab67a1d41b
* Update fastqc to produce multi-version versions.yml * Update readme and pull request template * Fix markdownlint * remove variable * Change publish dir to lowercase * Re-add getSoftwareName * Add custom pytest-workflow test to ensure versions.yml is valid * Add docstring * Remove __init__.py as it is not needed * Remove changes to README, since this part went to nf-co.re * Add NF_CORE_TEST env var * Fix editorconfig * Add additional consistency checks for versions.yml * Update multiqc module * Fix output channel
1.5 KiB
1.5 KiB
PR checklist
Closes #XXX
- This comment contains a description of changes (with reason).
- If you've fixed a bug or added code that should be tested, add tests!
- If you've added a new tool - have you followed the module conventions in the contribution docs
- If necessary, include test data in your PR.
- Remove all TODO statements.
- Emit the
versions.ymlfile. - Follow the naming conventions.
- Follow the parameters requirements.
- Follow the input/output options guidelines.
- Add a resource
label - Use BioConda and BioContainers if possible to fulfil software requirements.
- Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wdPROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wdPROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd