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https://github.com/MillironX/nf-core_modules.git
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555f1710e0
* Update test paths in bwa mappers * Fix indentation * indices pass lcoally now * no idea how they could ever pass before, Tests pass locally no * Update samtools and bwamem2 versions * Correct mulled containers + md5
39 lines
1.6 KiB
YAML
39 lines
1.6 KiB
YAML
- name: bwamem2 mem single-end
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command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_single_end -c tests/config/nextflow.config
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tags:
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- bwamem2
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- bwamem2_mem
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- bwamem2_mem_single_end
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files:
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- path: ./output/bwamem2/test.bam
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md5sum: 2133c011119ea11f06f0a9b1621ba05b
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- path: ./output/index/bwamem2/genome.fasta.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/index/bwamem2/genome.fasta.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/index/bwamem2/genome.fasta.0123
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md5sum: b02870de80106104abcb03cd9463e7d8
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- path: ./output/index/bwamem2/genome.fasta.bwt.2bit.64
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md5sum: d097a1b82dee375d41a1ea69895a9216
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- path: ./output/index/bwamem2/genome.fasta.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- name: bwamem2 mem paired-end
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command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_paired_end -c tests/config/nextflow.config
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tags:
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- bwamem2
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- bwamem2_mem
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- bwamem2_mem_paired_end
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files:
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- path: ./output/bwamem2/test.bam
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md5sum: d8fadab5cef04faff1851a8162fc30b5
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- path: ./output/index/bwamem2/genome.fasta.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/index/bwamem2/genome.fasta.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/index/bwamem2/genome.fasta.0123
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md5sum: b02870de80106104abcb03cd9463e7d8
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- path: ./output/index/bwamem2/genome.fasta.bwt.2bit.64
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md5sum: d097a1b82dee375d41a1ea69895a9216
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- path: ./output/index/bwamem2/genome.fasta.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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