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86bb832fae
* nf-core template created * boilerplate and sarek_dsl2 code merged * adding an option to give it args * bai got away * seperating vcf files and vcf index files into seperate streams * some minor spacefixes * adding standard information about the module * removing typos * some basic tests based on tiddit tests * removed the bed parameter, should be provided via options.args instead * removing typos * adding indexed bam file instead * Adding changing out fasta with reference to deal with empty fasta input * adding the correct fasta * removing the empty test * adding the correct data to the testoutput and removing the md5sum since it constantly changes * adding target_bed to input * adding info on target bed * adding target bed to test * adding more files to the test * adding meta for target bed test * adding a test for target_bed * typo * fixing pytest with master
22 lines
1,010 B
YAML
22 lines
1,010 B
YAML
## TODO nf-core: Please run the following command to build this file:
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# nf-core modules create-test-yml strelka/germline
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- name: strelka germline
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command: nextflow run ./tests/software/strelka/germline -entry test_strelka_germline -c tests/config/nextflow.config
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tags:
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- strelka
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- strelka_germline
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files:
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- path: output/strelka/strelka_test_variants.vcf.gz
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- path: output/strelka/strelka_test_variants.vcf.gz.tbi
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- path: output/strelka/strelka_test_genome.vcf.gz
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- path: output/strelka/strelka_test_genome.vcf.gz.tbi
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- name: strelka germline target bed
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command: nextflow run ./tests/software/strelka/germline -entry test_strelka_germline_target_bed -c tests/config/nextflow.config
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tags:
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- strelka
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- strelka_germline
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files:
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- path: output/strelka/strelka_test_variants.vcf.gz
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- path: output/strelka/strelka_test_variants.vcf.gz.tbi
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- path: output/strelka/strelka_test_genome.vcf.gz
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- path: output/strelka/strelka_test_genome.vcf.gz.tbi
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