.. |
abacas
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abricate
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add module for abricate (#1280)
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2022-02-18 18:00:21 -07:00 |
adapterremoval
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agrvate
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allelecounter
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amps
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amrfinderplus
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add amrfinderplus module (#1284)
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2022-02-19 23:02:23 +00:00 |
arriba
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artic
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Patch fix artic/minion and ivar/variants modules (#1326)
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2022-02-18 17:36:09 +00:00 |
assemblyscan
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ataqv/ataqv
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
bakta
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bamaligncleaner
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bamcmp
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bamcmp (#1244)
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2022-02-02 16:38:41 +00:00 |
bamtools
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bamutil/trimbam
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bandage/image
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bbmap
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
bcftools
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bcftools/annotate follow up corrections (#1359)
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2022-02-28 10:16:29 -05:00 |
bedtools
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biobambam/bammarkduplicates2
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First version of the biobambam/bammarkduplicates2 module (#1247)
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2022-02-14 16:30:48 +00:00 |
bismark
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blast
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bowtie
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bowtie2
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bwa
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Update samtools version (#1361)
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2022-02-28 23:13:11 +01:00 |
bwamem2
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bwameth
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
cat
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cellranger
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checkm/lineagewf
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
chromap
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
clonalframeml
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cmseq/polymut
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cnvkit/batch
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controlfreec
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add controlfreec (#1333)
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2022-02-28 19:08:58 +01:00 |
cooler
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csvtk
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custom
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cutadapt
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damageprofiler
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dastool
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
dedup
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deeparg
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deeptools
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Add deeptools bamcoverage (#1316)
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2022-02-18 09:35:41 +01:00 |
deepvariant
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delly/call
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diamond
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
dragmap
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
dragonflye
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dshbio
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ectyper
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
emmtyper
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ensemblvep
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expansionhunter
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faqcs
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Faqcs (#1339)
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2022-02-23 16:30:22 +01:00 |
fargene
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fastani
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fastp
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fastqc
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fastqscan
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fasttree
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fgbio
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filtlong
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flash
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freebayes
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gatk4
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Gatk4 selectvariants (#1346)
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2022-02-24 09:51:48 +01:00 |
genmap
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genrich
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gffread
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glnexus
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graphmap2
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gstama
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gtdbtk/classifywf
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gubbins
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gunc
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gunzip
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hicap
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hifiasm
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hisat2
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hmmcopy
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hmmer
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feat: add hmmsearch module and tests (#1273)
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2022-02-23 15:32:33 +01:00 |
homer
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hpsuissero
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add module for hpsuisero (#1331)
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2022-02-27 17:58:35 -07:00 |
ichorcna
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New module: ichorCNA (#1182)
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2022-02-11 16:56:13 +01:00 |
idr
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imputeme/vcftoprs
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
iqtree
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
ismapper
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isoseq3
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
ivar
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Patch fix artic/minion and ivar/variants modules (#1326)
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2022-02-18 17:36:09 +00:00 |
jupyternotebook
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kallisto/index
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kallistobustools
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khmer/normalizebymedian
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
kleborate
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
kraken2/kraken2
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krona
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last
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leehom
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legsta
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add module for legsta (#1319)
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2022-02-18 17:42:18 -07:00 |
lima
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
lissero
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
lofreq
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
macrel/contigs
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macs2/callpeak
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mafft
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Add MAFFT module (#1351)
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2022-02-28 00:40:24 -07:00 |
malt
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
maltextract
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manta
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mapdamage2
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mash
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mashtree
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maxbin2
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medaka
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
megahit
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meningotype
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metabat2
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metaphlan3
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
methyldackel
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minia
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miniasm
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minimap2
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
mlst
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mobsuite/recon
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add mobsuite_recon module (#1270)
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2022-02-18 17:52:38 -07:00 |
mosdepth
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Update mosdepth (#1256)
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2022-02-09 12:45:55 +00:00 |
msisensor
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msisensorpro
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mtnucratio
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multiqc
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mummer
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muscle
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nanolyse
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nanoplot
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
ncbigenomedownload
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nextclade
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ngmaster
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nucmer
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
optitype
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
pairix
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pairtools
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pangolin
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Bump Pangolin version to 3.1.20 (#1296)
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2022-02-15 10:46:20 +00:00 |
paraclu
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pbbam/pbmerge
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pbccs
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
peddy
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phyloflash
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picard
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update args & convert to bam (#1355)
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2022-02-25 11:06:39 -07:00 |
pirate
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
plasmidid
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plink
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plink2
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pmdtools/filter
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porechop
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preseq/lcextrap
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prodigal
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prokka
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pycoqc
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pydamage
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qcat
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
qualimap
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add qualimap with cram files + remove val from qualimap/bam, instead use empty list as everywhere else (#1320)
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2022-02-18 09:43:53 +01:00 |
quast
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racon
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rapidnj
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rasusa
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raven
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raxmlng
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
rgi/main
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add module for rgi (#1321)
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2022-02-18 17:23:44 -07:00 |
rmarkdownnotebook
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roary
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
rsem
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rseqc
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salmon
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samblaster
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samtools
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update samtools version to 1.15 (#1358)
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2022-02-28 12:42:29 +01:00 |
scoary
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seacr/callpeak
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
seqkit
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Seqkit pair (#1348)
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2022-02-24 15:07:35 +01:00 |
seqsero2
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
seqtk
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Seqtk seq (#1340)
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2022-02-23 17:02:51 +01:00 |
sequenzautils
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seqwish/induce
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shovill
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sistr
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add module for sistr (#1323)
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2022-02-18 17:33:48 -07:00 |
snpdists
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snpeff
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snpsift/split
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snpsites
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
sourmash/sketch
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feat: add sourmash sketch (#1287)
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2022-02-15 12:30:28 +01:00 |
spades
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
spatyper
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sratools
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ssuissero
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add module for ssuisero (#1329)
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2022-02-27 20:04:03 -07:00 |
staphopiasccmec
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star
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strelka
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stringtie
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subread/featurecounts
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svdb
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update svdb merge (#1274)
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2022-02-24 09:49:30 +01:00 |
tabix
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tbprofiler/profile
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
tiddit
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transdecoder
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trimgalore
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ucsc
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ultra/pipeline
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unicycler
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untar
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unzip
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variantbam
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vcfanno
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refactored vcfanno (#1266)
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2022-02-21 11:49:21 +01:00 |
vcflib/vcfuniq
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vcftools
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yara
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