mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
30 lines
866 B
YAML
30 lines
866 B
YAML
name: graphmap2_index
|
|
description: A versatile pairwise aligner for genomic and spliced nucleotide sequences
|
|
keywords:
|
|
- index
|
|
- fasta
|
|
- reference
|
|
tools:
|
|
- graphmap2:
|
|
description: |
|
|
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
|
|
homepage: https://github.com/lbcb-sci/graphmap2
|
|
documentation: https://github.com/lbcb-sci/graphmap2#graphmap2---a-highly-sensitive-and-accurate-mapper-for-long-error-prone-reads
|
|
licence: ["MIT"]
|
|
input:
|
|
- fasta:
|
|
type: file
|
|
description: |
|
|
Reference database in FASTA format.
|
|
output:
|
|
- gmidx:
|
|
type: file
|
|
description: Graphmap2 fasta index in gmidx format
|
|
pattern: "*.gmidx"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@yuukiiwa"
|
|
- "@drpatelh"
|