James A. Fellows Yates 632587a7fc Add bamutil/trimbam (#1060) ... * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Add bamUtil trimBam * Update modules/bamutil/trimbam/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/bamutil/trimbam/main.nf * Changes after code-review * YAML lint Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>		2021-11-15 16:44:12 +00:00
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__pycache__	Update module: pbccs (#1018)	2021-11-11 14:19:26 +00:00
config	Add bamutil/trimbam (#1060)	2021-11-15 16:44:12 +00:00
modules	Add bamutil/trimbam (#1060)	2021-11-15 16:44:12 +00:00
subworkflows/nf-core	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
test_versions_yml.py	Subworkflow Infrastructure (#662)	2021-10-08 16:02:42 +01:00