James A. Fellows Yates 632587a7fc Add bamutil/trimbam (#1060) ... * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Add bamUtil trimBam * Update modules/bamutil/trimbam/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/bamutil/trimbam/main.nf * Changes after code-review * YAML lint Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>		2021-11-15 16:44:12 +00:00
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nextflow.config	Remove docker.runOptions in favor of docker.userEmulation. (#525)	2021-05-27 18:29:17 +01:00
pytest_modules.yml	Add bamutil/trimbam (#1060)	2021-11-15 16:44:12 +00:00
pytest_subworkflows.yml	Add panel of normals subworkflow (#1044)	2021-11-09 10:16:43 +00:00
test_data.config	Cooler zoomify (#514)	2021-11-15 17:18:02 +01:00