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e27553b989
* Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Add dedup (tests and version not working) * Fix dedup and tests Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>
13 lines
530 B
YAML
13 lines
530 B
YAML
- name: dedup test_dedup
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command: nextflow run tests/modules/dedup -entry test_dedup -c tests/config/nextflow.config
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tags:
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- dedup
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files:
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- path: output/dedup/test.paired_end.dedup.json
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md5sum: 2def0b54aba1fafa21b274f260de1b6f
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- path: output/dedup/test.paired_end.hist
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md5sum: df3492273a1db0d8152e35d9d5e38aa6
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- path: output/dedup/test.paired_end.log
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md5sum: 4b8855bd63b2f4b37da4cfb17e61fb00
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- path: output/dedup/test.paired_end_rmdup.bam
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md5sum: 8b0408fe3e258989095303a47e5b5061
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