nf-core_modules/tests/modules/gffread/main.nf
José Fernández Navarro e9c57083a0
Fix bug in gffread (#686)
* Fix bug in gffread that would cause it to fail if the input has .gtf as extension

* Update test.yml

* Update meta file

* Update main.nf

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-15 19:55:08 +01:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { GFFREAD } from '../../../modules/gffread/main.nf' addParams( options: [suffix: '.out'] )
workflow test_gffread {
input = file(params.test_data['sarscov2']['genome']['genome_gff3'], checkIfExists: true)
GFFREAD ( input )
}