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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
name: artic_guppyplex
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description: Aggregates fastq files with demultiplexed reads
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keywords:
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- artic
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- aggregate
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- demultiplexed reads
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tools:
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- artic:
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description: ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore
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homepage: https://artic.readthedocs.io/en/latest/
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documentation: https://artic.readthedocs.io/en/latest/
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tool_dev_url: https://github.com/artic-network/fieldbioinformatics
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doi: ""
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq_dir:
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type: directory
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description: Directory containing the fastq files with demultiplexed reads
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pattern: "*"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: Aggregated FastQ files
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pattern: "*.{fastq.gz}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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