mirror of
https://github.com/MillironX/nf-core_modules.git
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d1c6082a66
* Update HISAT2 build module * Bump preseq version * Fix tests * Add meta.yml for preseq to fix linting * Auto-detect --genomeSAindexNbases for smaller genomes * Add placeholder to use human data for the tests * Add CSI output option to samtools/index * Fix samtools/index tests
17 lines
607 B
YAML
17 lines
607 B
YAML
- name: samtools index bai
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command: nextflow run tests/software/samtools/index -entry test_samtools_index_bai -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/index
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files:
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- path: output/samtools/test_paired_end.sorted.bam.bai
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md5sum: 704c10dd1326482448ca3073fdebc2f4
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- name: samtools index csi
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command: nextflow run tests/software/samtools/index -entry test_samtools_index_csi -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/index
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files:
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- path: output/samtools/test_paired_end.sorted.bam.csi
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md5sum: 3dd9e3ed959fca075b88bb8dc3cf7dbd
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