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20 lines
416 B
Text
20 lines
416 B
Text
process shovill {
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tag { shovill }
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publishDir "${params.outdir}", pattern: '*.fasta', mode: 'copy'
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container "quay.io/biocontainers/shovill:1.0.9--0"
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input:
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tuple(sample_id, path(forward), path(reverse))
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output:
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path("${sample_id}.fasta")
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script:
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"""
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shovill --R1 ${forward} --R2 ${reverse} --outdir shovill_out
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mv shovill_out/contigs.fa ${sample_id}.fasta
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"""
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}
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