mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
59ca7444cf
* adding plink module using nf-core tool [ci skip] * Restructures the project for plink/vcf (#1) * Add version string for plink * Create a plink/vcf module * small tweaks on main.nf and started to test [ci skip] * small changes on test args, local test with docker passed! * Update plink/vcf module listing * Update tag * fix tags as per linting guidelines * revert to the original state of tags * adding --threads to `main.nf` and `meta.yml` information Co-authored-by: Abhinav Sharma <abhi18av@users.noreply.github.com>
53 lines
1.3 KiB
YAML
53 lines
1.3 KiB
YAML
name: plink_vcf
|
|
description: Analyses variant calling files using plink
|
|
keywords:
|
|
- plink
|
|
- vcf
|
|
tools:
|
|
- plink:
|
|
description: |
|
|
Whole genome association analysis toolset, designed to perform a range
|
|
of basic, large-scale analyses in a computationally efficient manner
|
|
homepage: "https://www.cog-genomics.org/plink"
|
|
documentation: None
|
|
tool_dev_url: "https://www.cog-genomics.org/plink/1.9/dev"
|
|
doi: ""
|
|
licence: ['GPL']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: Variant calling file (vcf)
|
|
pattern: "*.{vcf}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
- bed:
|
|
type: file
|
|
description: PLINK binary biallelic genotype table
|
|
pattern: "*.{bed}"
|
|
- bim:
|
|
type: file
|
|
description: PLINK extended MAP file
|
|
pattern: "*.{bim}"
|
|
- fam:
|
|
type: file
|
|
description: PLINK sample information file
|
|
pattern: "*.{fam}"
|
|
|
|
authors:
|
|
- "@Mxrcon"
|
|
- "@abhi18av"
|