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1287ba48fe
* Update version & add intervals usage * Fix config when passing intervals as file * Use proper paths
14 lines
396 B
Text
14 lines
396 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: DEEPVARIANT {
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ext.args = ' --regions=\"chr22:0-40001\" --model_type=WGS '
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ext.prefix = { "${meta.id}_out" }
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}
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withName: DEEPVARIANT_INTERVALS {
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ext.args = '--model_type=WGS '
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ext.prefix = { "${meta.id}_out" }
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}
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}
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