mirror of
https://github.com/MillironX/nf-core_modules.git
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159 lines
5.6 KiB
YAML
159 lines
5.6 KiB
YAML
- name: busco test_busco_genome_single_fasta
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command: nextflow run tests/modules/busco -entry test_busco_genome_single_fasta -c tests/config/nextflow.config
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tags:
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- busco
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files:
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- path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.json
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contains:
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- 'one_line_summary'
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- 'input_file'
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- 'mode'
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- 'dataset'
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- path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.txt
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contains:
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- 'BUSCO version'
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- 'The lineage dataset is'
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- 'BUSCO was run in mode'
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- 'Complete BUSCOs'
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- 'Missing BUSCOs'
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- 'Dependencies and versions'
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- path: output/busco/short_summary.specific.bacteroidetes_odb10.genome.fna.json
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contains:
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- 'one_line_summary'
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- 'input_file'
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- 'mode'
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- 'dataset'
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- path: output/busco/short_summary.specific.bacteroidetes_odb10.genome.fna.txt
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contains:
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- 'BUSCO version'
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- 'The lineage dataset is'
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- 'BUSCO was run in mode'
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- 'Complete BUSCOs'
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- 'Missing BUSCOs'
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- 'Dependencies and versions'
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- path: output/busco/test-bacteria_odb10-busco.batch_summary.txt
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md5sum: e50690742e9ae6abdd2bf99334ff9e12
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- path: output/busco/test-bacteroidetes_odb10-busco.batch_summary.txt
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md5sum: 4c1b2c4317c88398eddc30877ed740d9
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- path: output/busco/versions.yml
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md5sum: 8aa830f71587d859df35c6cfab59f35d
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- name: busco test_busco_genome_multi_fasta
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command: nextflow run tests/modules/busco -entry test_busco_genome_multi_fasta -c tests/config/nextflow.config
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tags:
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- busco
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files:
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- path: output/busco/short_summary.specific.bacteria_odb10.genome.fasta.json
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contains:
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- 'one_line_summary'
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- 'input_file'
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- 'mode'
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- 'dataset'
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- path: output/busco/short_summary.specific.bacteria_odb10.genome.fasta.txt
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contains:
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- 'BUSCO version'
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- 'The lineage dataset is'
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- 'BUSCO was run in mode'
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- 'Complete BUSCOs'
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- 'Missing BUSCOs'
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- 'Dependencies and versions'
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- path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.json
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contains:
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- 'one_line_summary'
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- 'input_file'
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- 'mode'
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- 'dataset'
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- path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.txt
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contains:
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- 'BUSCO version'
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- 'The lineage dataset is'
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- 'BUSCO was run in mode'
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- 'Complete BUSCOs'
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- 'Missing BUSCOs'
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- 'Dependencies and versions'
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- path: output/busco/test-bacteria_odb10-busco.batch_summary.txt
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md5sum: 5360dfe83bec1f5741ee115e53e6b517
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- path: output/busco/versions.yml
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md5sum: 9a959eb0a1f765777dff1ea2f5c139c0
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- name: busco test_busco_eukaryote_metaeuk
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command: nextflow run tests/modules/busco -entry test_busco_eukaryote_metaeuk -c tests/config/nextflow.config
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tags:
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- busco
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files:
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- path: output/busco/short_summary.specific.eukaryota_odb10.genome.fasta.json
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contains:
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- 'one_line_summary'
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- 'input_file'
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- 'mode'
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- 'dataset'
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- path: output/busco/short_summary.specific.eukaryota_odb10.genome.fasta.txt
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contains:
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- 'BUSCO version'
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- 'The lineage dataset is'
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- 'BUSCO was run in mode'
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- 'Complete BUSCOs'
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- 'Missing BUSCOs'
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- 'Dependencies and versions'
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- path: output/busco/test-eukaryota_odb10-busco.batch_summary.txt
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md5sum: a70806f99ba5706d7353d3353b3f1d2b
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- path: output/busco/versions.yml
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md5sum: 34a808c257e6db1b0456f3b4372bc477
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- name: busco test_busco_eukaryote_augustus
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command: nextflow run tests/modules/busco -entry test_busco_eukaryote_augustus -c tests/config/nextflow.config
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tags:
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- busco
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files:
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- path: output/busco/test-eukaryota_odb10-busco.batch_summary.txt
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md5sum: 660393dd43cd6a093b952d4b8ad41e40
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- path: output/busco/versions.yml
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md5sum: 2caac915461410b16a1524ac064cd0df
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- name: busco test_busco_protein
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command: nextflow run tests/modules/busco -entry test_busco_protein -c tests/config/nextflow.config
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tags:
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- busco
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files:
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- path: output/busco/short_summary.specific.bacteria_odb10.proteome.fasta.json
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contains:
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- 'one_line_summary'
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- 'input_file'
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- 'mode'
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- 'dataset'
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- path: output/busco/short_summary.specific.bacteria_odb10.proteome.fasta.txt
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contains:
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- 'BUSCO version'
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- 'The lineage dataset is'
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- 'BUSCO was run in mode'
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- 'Complete BUSCOs'
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- 'Missing BUSCOs'
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- 'Dependencies and versions'
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- path: output/busco/test-bacteria_odb10-busco.batch_summary.txt
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md5sum: fd3b4e30ce74d1fcb95d6286d6e2049f
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- path: output/busco/versions.yml
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md5sum: d7392261a57960a7e6aea609dce824f5
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- name: busco test_busco_transcriptome
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command: nextflow run tests/modules/busco -entry test_busco_transcriptome -c tests/config/nextflow.config
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tags:
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- busco
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files:
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- path: output/busco/short_summary.specific.bacteria_odb10.test1.contigs.fa.json
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contains:
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- 'one_line_summary'
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- 'input_file'
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- 'mode'
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- 'dataset'
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- path: output/busco/short_summary.specific.bacteria_odb10.test1.contigs.fa.txt
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contains:
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- 'BUSCO version'
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- 'The lineage dataset is'
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- 'BUSCO was run in mode'
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- 'Complete BUSCOs'
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- 'Missing BUSCOs'
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- 'Dependencies and versions'
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- path: output/busco/test-bacteria_odb10-busco.batch_summary.txt
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md5sum: 9a176cafe66ac0adca89dc34ad2be13f
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- path: output/busco/versions.yml
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md5sum: 30eacbc7df70f6b1e72e0a7b6d02a7e1
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