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applybqsr
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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applybqsrspark
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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applyvqsr
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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baserecalibrator
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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baserecalibratorspark
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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bedtointervallist
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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calculatecontamination
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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combinegvcfs
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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createsequencedictionary
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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createsomaticpanelofnormals
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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estimatelibrarycomplexity
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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fastqtosam
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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filtermutectcalls
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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gatherbqsrreports
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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gatherpileupsummaries
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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genomicsdbimport
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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genotypegvcfs
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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getpileupsummaries
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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haplotypecaller
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Changed tbi as optional output in GATK4 HaplotypeCaller (#1576)
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2022-04-28 13:41:20 +02:00 |
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indexfeaturefile
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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intervallisttobed
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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intervallisttools
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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learnreadorientationmodel
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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markduplicates
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Changed BAI as optional output to handle large genome
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2022-05-02 11:35:15 +02:00 |
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markduplicatesspark
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typo in command line (#1523)
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2022-04-13 15:15:44 +02:00 |
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mergebamalignment
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feat added stub to modules
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2022-05-02 10:34:14 +02:00 |
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mergemutectstats
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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mergevcfs
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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mutect2
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fix gatk4_mutect2 test by changing main.nf
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2022-05-02 15:11:57 +02:00 |
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revertsam
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fix gatk4_reversam test
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2022-05-02 12:58:12 +02:00 |
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samtofastq
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feat added stub to modules
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2022-05-02 10:34:14 +02:00 |
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selectvariants
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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splitintervals
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added tmp-dir + alignment correction
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2022-05-13 14:35:22 +02:00 |
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splitncigarreads
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add intervals possibilities to splitncigarreads (#1571)
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2022-04-27 16:03:44 +02:00 |
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variantfiltration
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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variantrecalibrator
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
