nf-core_modules/tests/modules/bamtools/split/main.nf
2022-04-22 15:19:52 +02:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { BAMTOOLS_SPLIT as BAMTOOLS_SPLIT_SINGLE } from '../../../../modules/bamtools/split/main.nf'
include { BAMTOOLS_SPLIT as BAMTOOLS_SPLIT_MULTIPLE } from '../../../../modules/bamtools/split/main.nf'
workflow test_bamtools_split_single_input {
input = [
[ id:'test', single_end:false ], // meta map
file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
]
BAMTOOLS_SPLIT_SINGLE ( input )
}
workflow test_bamtools_split_multiple {
input = [
[ id:'test', single_end:false ], // meta map
[file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)]
]
BAMTOOLS_SPLIT_MULTIPLE ( input )
}