nf-core_modules/tests/software/bcftools/consensus/test.yml at 7c2f10f5917cc815b682b1edd22970b115f66f70 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-23 03:28:17 +00:00

Mark-S-Hill 889465cb2b

update test data paths (#373 )

* update test data paths

* Update test md5sums

* gatk test fixes & update variantfiltration main

* few extra fixes after review

* fix suspected format error

* Update software/gatk4/variantfiltration/main.nf

* Update software/gatk4/variantfiltration/main.nf

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-03-24 18:14:11 +00:00

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 - name: bcftools consensus test_bcftools_consensus
   command: nextflow run tests/software/bcftools/consensus -entry test_bcftools_consensus -c tests/config/nextflow.config
   tags:
     - bcftools_consensus
     - bcftools
   files:
     - path: output/bcftools/test.fa
       md5sum: e57d3e4d113f989bc069c5fd61627091