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41dfa13929
* test verified commit bcftools * adjust tests * add suggestions * test for actual file content
38 lines
1.3 KiB
Text
38 lines
1.3 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BCFTOOLS_STATS } from '../../../../modules/bcftools/stats/main.nf'
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workflow test_bcftools_stats {
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input = [ [ id:'test' ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
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[]]
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regions = []
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targets = []
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samples = []
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BCFTOOLS_STATS ( input, regions, targets, samples )
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}
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workflow test_bcftools_stats_regions {
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input = [ [ id:'test' ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true)]
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regions = file(params.test_data['sarscov2']['illumina']['test3_vcf_gz'], checkIfExists: true)
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targets = []
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samples = []
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BCFTOOLS_STATS ( input, regions, targets, samples )
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}
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workflow test_bcftools_stats_targets {
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input = [ [ id:'test' ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
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[]]
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regions = []
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targets = file(params.test_data['sarscov2']['illumina']['test2_vcf_targets_tsv_gz'], checkIfExists: true)
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samples = []
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BCFTOOLS_STATS ( input, regions, targets, samples )
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}
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