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63 lines
2.7 KiB
YAML
63 lines
2.7 KiB
YAML
- name: ensemblvep test_ensemblvep_fasta_json
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command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_json -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config
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tags:
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- ensemblvep
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files:
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- path: output/ensemblvep/test.ann.json
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- path: output/ensemblvep/test.summary.html
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- name: ensemblvep test_ensemblvep_fasta_tab
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command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_tab -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config
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tags:
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- ensemblvep
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files:
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- path: output/ensemblvep/test.ann.tab
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- path: output/ensemblvep/test.summary.html
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- name: ensemblvep test_ensemblvep_fasta_vcf
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command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_vcf -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config
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tags:
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- ensemblvep
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files:
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- path: output/ensemblvep/test.ann.vcf
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- path: output/ensemblvep/test.summary.html
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- name: ensemblvep test_ensemblvep_fasta_vcf_bgzip
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command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_vcf_bgzip -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config
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tags:
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- ensemblvep
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files:
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- path: output/ensemblvep/test.ann.vcf.gz
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- path: output/ensemblvep/test.summary.html
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- name: ensemblvep test_ensemblvep_fasta_vcf_gzip
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command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_vcf_gzip -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config
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tags:
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- ensemblvep
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files:
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- path: output/ensemblvep/test.ann.vcf.gz
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- path: output/ensemblvep/test.summary.html
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- name: ensemblvep test_ensemblvep_fasta
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command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config
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tags:
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- ensemblvep
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files:
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- path: output/ensemblvep/test.ann.vcf
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- path: output/ensemblvep/test.summary.html
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- name: ensemblvep test_ensemblvep_no_fasta
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command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_no_fasta -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config
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tags:
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- ensemblvep
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files:
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- path: output/ensemblvep/test.ann.vcf
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- path: output/ensemblvep/test.summary.html
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- name: ensemblvep test_ensemblvep_fasta_vcf_stub
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command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_vcf -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config -stub
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tags:
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- ensemblvep
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files:
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- path: output/ensemblvep/test.ann.vcf
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- path: output/ensemblvep/test.summary.html
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