nf-core_modules/tests/modules/ensemblvep/nextflow.config

process {

    publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }

    withName: ENSEMBLVEP {
        container = 'nfcore/vep:106.1.WBcel235'
    }

    withName: ENSEMBLVEP_JSON {
        container = 'nfcore/vep:106.1.WBcel235'
        ext.args = '--json'
    }

    withName: ENSEMBLVEP_TAB {
        container = 'nfcore/vep:106.1.WBcel235'
        ext.args = '--tab'
    }

    withName: ENSEMBLVEP_VCF {
        container = 'nfcore/vep:106.1.WBcel235'
        ext.args = '--vcf'
    }

    withName: ENSEMBLVEP_VCF_BGZIP {
        container = 'nfcore/vep:106.1.WBcel235'
        ext.args = '--vcf --compress_output bgzip'
    }

    withName: ENSEMBLVEP_VCF_GZIP {
        container = 'nfcore/vep:106.1.WBcel235'
        ext.args = '--vcf --compress_output gzip'
    }
}