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https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
59 lines
1.4 KiB
YAML
59 lines
1.4 KiB
YAML
name: nanoplot
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description: Run NanoPlot on nanopore-sequenced reads
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keywords:
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- quality control
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- qc
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- fastq
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- sequencing summary
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- nanopore
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tools:
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- nanoplot:
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description: |
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NanoPlot is a tool for ploting long-read sequencing data and
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alignment.
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homepage: http://nanoplot.bioinf.be
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documentation: https://github.com/wdecoster/NanoPlot
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licence: ["GPL-3.0-or-later"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: |
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List of input basecalled-FastQ files.
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- summary_txt:
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type: file
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description: |
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List of sequencing_summary.txt files from running basecalling.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- html:
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type: file
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description: NanoPlot report
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pattern: "*{.html}"
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- png:
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type: file
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description: Plots generated by NanoPlot
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pattern: "*{.png}"
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- txt:
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type: file
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description: Stats from NanoPlot
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pattern: "*{.txt}"
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- log:
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type: file
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description: log file of NanoPlot run
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pattern: "*{.log}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@drpatelh"
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- "@yuukiiwa"
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