Jose Espinosa-Carrasco 8f4363ccb5 Merge pull request #247 from JoseEspinosa/bcftools-mpileup ... Add bcftools mpileup module		2021-02-24 09:24:43 +01:00
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bandage/image	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
bcftools	Correct yml file, add fasta to input and correct vcf on output	2021-02-24 09:15:18 +01:00
bedtools	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
bismark	add bismark/deduplicate + tests	2021-02-23 18:02:16 +01:00
blast	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
bowtie	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
bowtie2	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
bwa	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
bwamem2	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
bwameth	bwameth/align: fix fasta name retrieval	2021-02-20 13:12:43 +01:00
cat/fastq	@kevinmenden sanity fix	2021-02-16 23:58:52 +00:00
cutadapt	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
deeptools	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
dsh	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
fastp	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
fastqc	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
gatk/createsequencedictionary	Update software/gatk/createsequencedictionary/main.nf	2021-02-16 22:08:11 +00:00
gatk4	added gatk4 revertsam	2021-02-22 15:21:39 +01:00
gffread	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
gunzip	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
hisat2	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
homer/annotatepeaks	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
ivar	Merge pull request #172 from andersgs/ivar-variant	2021-02-16 23:20:30 +00:00
lib	style(#77): Fix editorconfig errors	2020-12-17 17:50:24 -06:00
macs2/callpeak	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
methyldackel	add methyldackel/mbias + tests	2021-02-17 19:27:57 +01:00
minimap2/align	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
mosdepth	Update software/mosdepth/main.nf	2021-02-15 22:49:53 +00:00
multiqc	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
pangolin	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
phantompeakqualtools	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
picard	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
preseq/lcextrap	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
qualimap	qualimap/bamqc: remove unneeded variable definition	2021-02-18 10:00:49 +01:00
quast	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
rsem	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
rseqc	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
salmon	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
samtools	faidx: add process label	2021-02-17 16:56:45 +01:00
seacr/callpeak	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
seqwish/induce	Add module for seqwish/induce	2021-02-17 11:19:47 -06:00
sortmerna	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
star	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
stringtie	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
subread/featurecounts	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
tabix	Merge pull request #180 from MaxUlysse/master_tabix_bgzip	2021-02-16 23:32:23 +00:00
TOOL/SUBTOOL	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
trimgalore	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
ucsc/bedgraphtobigwig	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
umitools	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
untar	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00