nf-core_modules/tests/modules/pydamage/analyze/test.yml at 8f7e5c050ee99d277b4ed0c596962ee79fc769a8 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-15 06:03:10 +00:00

James A. Fellows Yates cbfc8eb46c

Pydamage analyzer update (#863 )

* Specify more guidelines on input channels

* Linting

* Updates based on code review

* Update README.md

* Fix broken sentence

* feat: add megahit module, currently decompressed output

* Update main.nf

* Update tests/modules/megahit/test.yml

Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* feat: compress all outputs, remove md5sums due to gz stochasicity

* fix: wrong conda channel for pigz

* fix: broken singleend tests and update meta.yml

* Missed one

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* fix: pigz formatting

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Apply suggestions from code review

* Update md5sum due to test-dataset update

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>

2021-10-18 15:24:49 +02:00

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YAML

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 - name: pydamage analyze test workflow
   command: nextflow run tests/modules/pydamage/analyze -entry test_pydamage -c tests/config/nextflow.config
   tags:
     - pydamage
     - pydamage/analyze
   files:
     - path: output/pydamage/pydamage_results/pydamage_results.csv
       md5sum: 37ee6b4dee6890fd2ec8550337f21ac9