mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
47 lines
1.3 KiB
YAML
47 lines
1.3 KiB
YAML
name: quast
|
|
description: Quality Assessment Tool for Genome Assemblies
|
|
keywords:
|
|
- quast
|
|
- assembly
|
|
- quality
|
|
tools:
|
|
- quast:
|
|
description: |
|
|
QUAST calculates quality metrics for genome assemblies
|
|
homepage: http://bioinf.spbau.ru/quast
|
|
doi: https://doi.org/10.1093/bioinformatics/btt086
|
|
licence: ['GPL-2.0-only']
|
|
input:
|
|
- consensus:
|
|
type: file
|
|
description: |
|
|
Fasta file containing the assembly of interest
|
|
- fasta:
|
|
type: file
|
|
description: |
|
|
The genome assembly to be evaluated. Has to contain at least a non-empty string dummy value.
|
|
- use_fasta:
|
|
type: boolean
|
|
description: Whether to use the provided fasta reference genome file
|
|
- gff:
|
|
type: file
|
|
description: The genome GFF file. Has to contain at least a non-empty string dummy value.
|
|
- use_gff:
|
|
type: boolean
|
|
description: Whether to use the provided gff reference annotation file
|
|
|
|
output:
|
|
- quast:
|
|
type: directory
|
|
description: Directory containing complete quast report
|
|
pattern: "{prefix}.lineage_report.csv"
|
|
- report:
|
|
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@kevinmenden"
|