nf-core_modules/modules/gatk4
2022-05-13 14:35:22 +02:00
..
applybqsr Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
applybqsrspark Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
applyvqsr Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
baserecalibrator Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
baserecalibratorspark Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
bedtointervallist Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
calculatecontamination Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
combinegvcfs Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
createsequencedictionary Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
createsomaticpanelofnormals Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
estimatelibrarycomplexity Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
fastqtosam Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
filtermutectcalls Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
gatherbqsrreports Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
gatherpileupsummaries Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
genomicsdbimport Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
genotypegvcfs Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
getpileupsummaries Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
haplotypecaller Changed tbi as optional output in GATK4 HaplotypeCaller (#1576) 2022-04-28 13:41:20 +02:00
indexfeaturefile Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
intervallisttobed Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
intervallisttools Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
learnreadorientationmodel Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
markduplicates Changed BAI as optional output to handle large genome 2022-05-02 11:35:15 +02:00
markduplicatesspark typo in command line (#1523) 2022-04-13 15:15:44 +02:00
mergebamalignment feat added stub to modules 2022-05-02 10:34:14 +02:00
mergemutectstats Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
mergevcfs Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
mutect2 fix gatk4_mutect2 test by changing main.nf 2022-05-02 15:11:57 +02:00
revertsam fix gatk4_reversam test 2022-05-02 12:58:12 +02:00
samtofastq feat added stub to modules 2022-05-02 10:34:14 +02:00
selectvariants Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
splitintervals added tmp-dir + alignment correction 2022-05-13 14:35:22 +02:00
splitncigarreads add intervals possibilities to splitncigarreads (#1571) 2022-04-27 16:03:44 +02:00
variantfiltration Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00
variantrecalibrator Improve syntax/logic coherence in all gatk4 plugins (#1459) 2022-04-12 17:15:39 +02:00