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4ed5e4eff3
* add liftOver module * add liftover module tests * fix getProcessName * fix tests * fix out of date function * version numbers should be numeric * drop versions.yml from test.yml * Update modules/ucsc/liftover/main.nf Remove software name variable Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update tests/modules/ucsc/liftover/main.nf Use test chain file Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * add genome_chain_gz to test data config * update md5sum for new chain test data * Fix indentation in file declaration Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
14 lines
485 B
Text
14 lines
485 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { UCSC_LIFTOVER } from '../../../../modules/ucsc/liftover/main.nf' addParams( options: [:] )
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workflow test_ucsc_liftover {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['genome']['genome_bed'], checkIfExists: true)]
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chain = file(params.test_data['homo_sapiens']['genome']['genome_chain_gz'], checkIfExists: true)
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UCSC_LIFTOVER ( input, chain )
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}
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