mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
4ed5e4eff3
* add liftOver module * add liftover module tests * fix getProcessName * fix tests * fix out of date function * version numbers should be numeric * drop versions.yml from test.yml * Update modules/ucsc/liftover/main.nf Remove software name variable Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update tests/modules/ucsc/liftover/main.nf Use test chain file Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * add genome_chain_gz to test data config * update md5sum for new chain test data * Fix indentation in file declaration Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
14 lines
485 B
Text
14 lines
485 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { UCSC_LIFTOVER } from '../../../../modules/ucsc/liftover/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_ucsc_liftover {
|
|
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['homo_sapiens']['genome']['genome_bed'], checkIfExists: true)]
|
|
chain = file(params.test_data['homo_sapiens']['genome']['genome_chain_gz'], checkIfExists: true)
|
|
|
|
UCSC_LIFTOVER ( input, chain )
|
|
}
|