mirror of
https://github.com/MillironX/nf-core_modules.git
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60c65fb386
* Add ultra/index and ultra/align modules * Correct tag and prefix * Fix typos * Remove SAMTOOLS SORT from test * Update: Convert sam to bam * Add tag to docker image * Fix typo * Add args2 for samtools
14 lines
322 B
Text
14 lines
322 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: GFFREAD {
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ext.args = '--sort-alpha --keep-genes -T'
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ext.prefix = { "${gff.baseName}_sorted" }
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}
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withName: ULTRA_INDEX {
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ext.args = '--disable_infer'
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}
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}
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