..
abacas
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
adapterremoval
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
agrvate
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
allelecounter
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
amps
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
arriba
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
artic
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
assemblyscan
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ataqv /ataqv
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bakta
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bamaligncleaner
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bamcmp
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bamtools
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bamutil /trimbam
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bandage /image
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bbmap
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bcftools
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bedtools
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
biobambam /bammarkduplicates2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bismark
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
blast
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bowtie
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bowtie2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bwa
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bwamem2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bwameth
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
cat
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
cellranger
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
checkm /lineagewf
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
chromap
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
clonalframeml
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
cmseq /polymut
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
cnvkit /batch
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
cooler
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
csvtk
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
custom
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
cutadapt
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
damageprofiler
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
dastool
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
dedup
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
deeparg
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
deeptools
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
deepvariant
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
delly /call
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
diamond
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
dragmap
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
dragonflye
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
dshbio
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ectyper
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
emmtyper
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ensemblvep
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
expansionhunter
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
fargene
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
fastani
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
fastp
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
fastqc
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
fastqscan
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
fasttree
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
fgbio
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
filtlong
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
flash
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
freebayes
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
gatk4
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
genmap
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
genrich
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
gffread
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
glnexus
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
graphmap2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
gstama
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
gtdbtk /classifywf
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
gubbins
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
gunc
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
gunzip
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
hicap
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
hifiasm
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
hisat2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
hmmcopy
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
hmmer /hmmalign
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
homer
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ichorcna
New module: ichorCNA ( #1182 )
2022-02-11 16:56:13 +01:00
idr
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
imputeme /vcftoprs
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
iqtree
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ismapper
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
isoseq3
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ivar
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
jupyternotebook
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
kallisto /index
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
kallistobustools
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
khmer /normalizebymedian
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
kleborate
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
kraken2 /kraken2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
krona
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
last
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
leehom
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
lima
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
lissero
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
lofreq
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
macrel /contigs
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
macs2 /callpeak
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
malt
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
maltextract
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
manta
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
mapdamage2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
mash
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
mashtree
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
maxbin2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
medaka
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
megahit
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
meningotype
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
metabat2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
metaphlan3
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
methyldackel
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
minia
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
miniasm
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
minimap2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
mlst
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
mosdepth
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
msisensor
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
msisensorpro
Add msisensorpro ( #1267 )
2022-02-09 21:05:49 +01:00
mtnucratio
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
multiqc
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
mummer
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
muscle
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
nanolyse
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
nanoplot
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ncbigenomedownload
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
nextclade
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ngmaster
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
nucmer
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
optitype
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
pairix
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
pairtools
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
pangolin
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
paraclu
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
pbbam /pbmerge
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
pbccs
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
peddy
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
phantompeakqualtools
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
phyloflash
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
picard
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
pirate
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
plasmidid
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
plink
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
plink2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
pmdtools /filter
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
porechop
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
preseq /lcextrap
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
prodigal
fix yml formatting ( #1263 )
2022-02-07 18:16:43 +01:00
prokka
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
pycoqc
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
pydamage
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
qcat
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
qualimap
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
quast
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
racon
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
rapidnj
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
rasusa
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
raven
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
raxmlng
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
rmarkdownnotebook
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
roary
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
rsem
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
rseqc
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
salmon
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
samblaster
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
samtools
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
scoary
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
seacr /callpeak
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
seqkit /split2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
seqsero2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
seqtk
Seqtk rename ( #1304 )
2022-02-16 17:28:08 +01:00
sequenzautils
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
seqwish /induce
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
shovill
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
snpdists
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
snpeff
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
snpsift /split
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
snpsites
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
sortmerna
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
sourmash /sketch
feat: add sourmash sketch ( #1287 )
2022-02-15 12:30:28 +01:00
spades
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
spatyper
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
sratools
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
staphopiasccmec
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
star
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
strelka
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
stringtie
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
subread /featurecounts
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
svdb
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
tabix
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
tbprofiler /profile
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
tiddit
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
transdecoder
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
trimgalore
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ucsc
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ultra /pipeline
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
umitools
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
unicycler
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
untar
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
unzip
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
variantbam
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
vcfanno
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
vcflib /vcfuniq
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
vcftools
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
yara
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00