mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-23 08:32:03 +00:00
21 lines
644 B
Text
Executable file
21 lines
644 B
Text
Executable file
#!/usr/bin/env nextflow
|
|
nextflow.preview.dsl = 2
|
|
|
|
params.outdir = "." // gets set in nextflow.config file (as './results/fastqc')
|
|
params.fastqc_args = ''
|
|
params.verbose = false
|
|
|
|
// TODO: check the output files in some way
|
|
// include '../../../nf-core/module_testing/check_process_outputs.nf'
|
|
include '../main.nf'
|
|
|
|
// Define input channels
|
|
ch_read_files = Channel
|
|
.fromFilePairs('../../../test-datasets/test*{1,2}.fastq.gz',size:-1)
|
|
// .view() // to check whether the input channel works
|
|
|
|
// Run the workflow
|
|
workflow {
|
|
FASTQC (ch_read_files, params.outdir, params.fastqc_args, params.verbose)
|
|
// .check_output()
|
|
}
|