nf-core_modules/modules/gatk4/gatherbqsrreports/meta.yml
FriederikeHanssen a9dd46f010
add gatk4/gatherbqsr (#1130)
* nf-core modules create

* add module files

* indent

* remove templte code

* manually revert pytest changes from tools

* manually revert pytest changes from tools

* add include statement back in

Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
2021-12-08 23:43:36 +01:00

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1.1 KiB
YAML

name: gatk4_gatherbqsrreports
description: write your description here
keywords:
- gatk4
- gatk4_gatherbqsrreports
- base_recalibration
tools:
- gatk4:
description: Genome Analysis Toolkit (GATK4)
homepage: https://gatk.broadinstitute.org/hc/en-us
documentation: https://gatk.broadinstitute.org/hc/en-us
tool_dev_url: https://github.com/broadinstitute/gatk
doi: "10.1158/1538-7445.AM2017-3590"
licence: ['BSD-3-clause']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- recal_table:
type: file
description: File(s) containing BQSR table(s)
pattern: "*.table"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- recal_table:
type: file
description: File containing joined BQSR table
pattern: "*.table"
authors:
- "@FriederikeHanssen"