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42 lines
985 B
YAML
42 lines
985 B
YAML
name: "khmer_uniquekmers"
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description:
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keywords:
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- khmer
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- k-mer
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- effective genome size
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tools:
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- "khmer":
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description: khmer k-mer counting library
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homepage: https://github.com/dib-lab/khmer
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documentation: https://khmer.readthedocs.io/en/latest/
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tool_dev_url: https://github.com/dib-lab/khmer
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doi: "10.12688/f1000research.6924.1"
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licence: ["BSD License"]
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input:
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- fasta:
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type: file
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description: fasta file
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pattern: "*.{fa,fasta}"
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- kmer_size:
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type: value
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description: k-mer size to use
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pattern: "[0-9]+"
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output:
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- report:
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type: file
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description: Text file containing unique-kmers.py execution report
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pattern: "report.txt"
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- kmers:
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type: file
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description: Text file containing number of kmers
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pattern: "kmers.txt"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@JoseEspinosa"
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