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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
24 lines
1.1 KiB
YAML
24 lines
1.1 KiB
YAML
- name: bbmap bbsplit test_bbmap_bbsplit
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command: nextflow run ./tests/modules/bbmap/bbsplit -entry test_bbmap_bbsplit -c ./tests/config/nextflow.config -c ./tests/modules/bbmap/bbsplit/nextflow.config
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tags:
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- bbmap/bbsplit
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- bbmap
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files:
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- path: output/bbmap/bbsplit/ref/genome/1/chr1.chrom.gz
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- path: output/bbmap/bbsplit/ref/genome/1/info.txt
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contains:
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- "Chromosome"
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- path: output/bbmap/bbsplit/ref/genome/1/merged_ref_9222711925172838098.fa.gz
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- path: output/bbmap/bbsplit/ref/genome/1/namelist.txt
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md5sum: 45e7a4cdc7a11a39ada56844ca3a1e30
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- path: output/bbmap/bbsplit/ref/genome/1/reflist.txt
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contains:
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- "genome.fasta"
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- path: output/bbmap/bbsplit/ref/genome/1/scaffolds.txt.gz
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- path: output/bbmap/bbsplit/ref/genome/1/summary.txt
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contains:
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- "scaffolds"
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- path: output/bbmap/bbsplit/ref/index/1/chr1_index_k13_c13_b1.block
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md5sum: 385913c1e84b77dc7bf36288ee1c8706
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- path: output/bbmap/bbsplit/ref/index/1/chr1_index_k13_c13_b1.block2.gz
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md5sum: 9de572b603abe5b6540056db8dee05a5
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