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63 lines
1.8 KiB
YAML
63 lines
1.8 KiB
YAML
name: "genescopefk"
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description: A derivative of GenomeScope2.0 modified to work with FastK
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keywords:
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- k-mer
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- genome profile
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- histogram
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tools:
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- "genescopefk":
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description: "A derivative of GenomeScope2.0 modified to work with FastK"
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homepage: "https://github.com/thegenemyers/GENESCOPE.FK"
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documentation: ""
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tool_dev_url: "https://github.com/thegenemyers/GENESCOPE.FK"
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doi: ""
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licence: "https://github.com/thegenemyers/GENESCOPE.FK/blob/main/LICENSE"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastk_histex_histogram:
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type: file
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description: A histogram formatted for GeneScope using the -G parameter from Fastk Histex
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pattern: "*.hist"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- linear_plot:
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type: file
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description: A GeneScope linear plot in PNG format
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pattern: "*_linear_plot.png"
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- transformed_linear_plot:
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type: file
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description: A GeneScope transformed linear plot in PNG format
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pattern: "*_transformed_linear_plot.png"
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- log_plot:
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type: file
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description: A GeneScope log plot in PNG format
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pattern: "*_log_plot.png"
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- transformed_log_plot:
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type: file
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description: A GeneScope transformed log plot in PNG format
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pattern: "*_transformed_log_plot.png"
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- model:
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type: file
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description: GeneScope model fit summary
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pattern: "*_model.txt"
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- summary:
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type: file
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description: GeneScope histogram summary
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pattern: "*_summary.txt"
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authors:
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- "@mahesh-panchal"
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