nf-core_modules/modules/samtools
Matthieu Muffato e9bc33485e
bugfix: when there is a single input file, stageAs("?/*) returns the path directly, not in a list (#2114)
* bugfix: when there is a single input file, stageAs("?/*) returns the path directly, not in a list

* Added a test

* Added a test

* Added MD5 checksum

Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>
2022-09-28 13:28:52 +01:00
..
ampliconclip Multithreaded samtools commands (#2080) 2022-09-26 17:44:36 +01:00
bam2fq Test --no-name to solve inconsistent checksums 2022-05-03 15:18:09 +02:00
collate samtools collate module (#2078) 2022-09-21 14:12:59 +01:00
collatefastq Add samtools/collatefastq module (#1536) 2022-04-20 10:05:17 +02:00
convert Reduce resource requests (#2021) 2022-09-07 10:33:05 +02:00
depth Multithreaded samtools commands (#2080) 2022-09-26 17:44:36 +01:00
dict Added the samtools/dict module (#1922) 2022-07-26 22:13:19 +01:00
faidx Added the optional .gzi output of "samtools faidx" (#1935) 2022-09-08 13:35:23 +01:00
fastq Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
fixmate Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
flagstat Fix/samtools flagstat (#1979) 2022-08-29 13:11:58 +02:00
getrg new module: samtools/getrg (#2123) 2022-09-28 14:00:10 +02:00
idxstats Multithreaded samtools commands (#2080) 2022-09-26 17:44:36 +01:00
index Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
markdup samtools markdup module (#2087) 2022-09-21 15:39:10 +01:00
merge bugfix: when there is a single input file, stageAs("?/*) returns the path directly, not in a list (#2114) 2022-09-28 13:28:52 +01:00
mpileup Reduce resource requests (#2021) 2022-09-07 10:33:05 +02:00
sort [samtools] add optional csi output (#2064) 2022-09-20 21:08:29 +01:00
stats fix samtools stats thread usage (#1975) 2022-08-29 12:05:47 +02:00
view add qname feature to samtools/view (#2115) 2022-09-28 13:04:41 +01:00