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51 lines
1.5 KiB
YAML
51 lines
1.5 KiB
YAML
name: "gatk_realignertargetcreator"
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## TODO nf-core: Add a description of the module and list keywords
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description: write your description here
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keywords:
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- sort
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tools:
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- "gatk":
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## TODO nf-core: Add a description and other details for the software below
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description: "The full Genome Analysis Toolkit (GATK) framework, license restricted."
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homepage: "None"
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documentation: "None"
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tool_dev_url: "None"
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doi: ""
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licence: "['https://software.broadinstitute.org/gatk/download/licensing', 'https://www.broadinstitute.org/gatk/about/#licensing', 'BSD']"
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## TODO nf-core: Add a description of all of the variables used as input
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input:
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# Only when we have meta
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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#
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## TODO nf-core: Delete / customise this example input
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- bam:
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type: file
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description: BAM/CRAM/SAM file
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pattern: "*.{bam,cram,sam}"
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## TODO nf-core: Add a description of all of the variables used as output
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output:
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#Only when we have meta
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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#
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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## TODO nf-core: Delete / customise this example output
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- bam:
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type: file
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description: Sorted BAM/CRAM/SAM file
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pattern: "*.{bam,cram,sam}"
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authors:
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- "@jfy133"
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