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* add racon * add medaka module * add medaka module * add medaka module * add medaka module * add medaka module * add medaka module * Indentation * Apply suggestions from code review Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * Update main.nf * Update main.nf * Apply suggestions from code review Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
16 lines
472 B
Text
16 lines
472 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MEDAKA } from '../../../modules/medaka/main.nf' addParams( options: [suffix:'.polished.genome'] )
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workflow test_medaka {
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input = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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MEDAKA ( input )
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}
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