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https://github.com/MillironX/nf-core_modules.git
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51 lines
1.8 KiB
YAML
51 lines
1.8 KiB
YAML
name: "bcftools_rhocall"
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## TODO nf-core: Add a description of the module and list keywords
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description: write your description here
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keywords:
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- sort
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tools:
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- "bcftools":
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## TODO nf-core: Add a description and other details for the software below
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description: "BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations."
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homepage: "None"
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documentation: "None"
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tool_dev_url: "None"
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doi: ""
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licence: "['GPL']"
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## TODO nf-core: Add a description of all of the variables used as input
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input:
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# Only when we have meta
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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#
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## TODO nf-core: Delete / customise this example input
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- bam:
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type: file
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description: BAM/CRAM/SAM file
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pattern: "*.{bam,cram,sam}"
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## TODO nf-core: Add a description of all of the variables used as output
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output:
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#Only when we have meta
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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#
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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## TODO nf-core: Delete / customise this example output
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- bam:
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type: file
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description: Sorted BAM/CRAM/SAM file
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pattern: "*.{bam,cram,sam}"
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authors:
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- "@ramprasadn"
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