mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
33 lines
935 B
YAML
33 lines
935 B
YAML
name: bbmap_index
|
|
description: This module calls bbmap.sh to create an index from a fasta file, ready to be used by bbmap.sh in mapping mode.
|
|
keywords:
|
|
- mapping
|
|
- index
|
|
- fasta
|
|
tools:
|
|
- bbmap:
|
|
description: BBMap is a short read aligner, as well as various other bioinformatic tools.
|
|
homepage: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
|
|
documentation: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
|
|
tool_dev_url: None
|
|
doi: ""
|
|
licence: ['UC-LBL license (see package)']
|
|
|
|
input:
|
|
- fasta:
|
|
type: fasta
|
|
description: fasta formatted file with nucleotide sequences
|
|
pattern: "*.{fna,fa,fasta}"
|
|
|
|
output:
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
- db:
|
|
type: directory
|
|
description: Directory with index files
|
|
pattern: "ref"
|
|
|
|
authors:
|
|
- "@daniellundin"
|