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906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
46 lines
1.3 KiB
YAML
46 lines
1.3 KiB
YAML
name: nanolyse
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description: DNA contaminant removal using NanoLyse
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keywords:
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- contaminant_removal
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tools:
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- nanolyse:
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description: |
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DNA contaminant removal using NanoLyse
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homepage: https://github.com/wdecoster/nanolyse
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documentation: https://github.com/wdecoster/nanolyse#nanolyse
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: |
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Basecalled reads in FASTQ.GZ format
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pattern: "*.fastq.gz"
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- fasta:
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type: file
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description: |
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A reference fasta file against which to filter.
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pattern: "*.fasta"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: Reads with contaminants removed in FASTQ format
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pattern: "*.fastq.gz"
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- log:
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type: file
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description: Log of the Nanolyse run.
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pattern: "*.log"
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- version:
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type: file
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description: File containing software version
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pattern: "versions.yml"
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authors:
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- "@yuukiiwa"
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