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31 lines
1 KiB
YAML
31 lines
1 KiB
YAML
name: FastQ Screen
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description: Run FastQ Screen on sequenced reads for Species Identification
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keywords:
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- Quality Control
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- Species Screen
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- Contamination
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tools:
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- fastqc:
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description: |
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FastQ Screen allows you to screen a library of sequences in
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FastQ format against a set of sequence databases so you can
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see if the composition of the library matches with what you expect.
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homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/
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documentation: https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/_build/html/index.html
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input:
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-
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- sample_id:
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type: string
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description: Sample identifier
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- reads:
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type: file
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description: Input FastQ file
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output:
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-
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- report:
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type: file
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description: FastQ Screen report
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pattern: "*_screen.{txt,html,png}"
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optional_pattern: "*_screen.bisulfite_orientation.png"
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authors:
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- "@FelixKrueger"
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