millironx/nf-core_modules
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nf-core_modules/modules/spaceranger
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Edmund Miller d40cbb5e58
build(spaceranger): Add initial dockerfile 
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
2021-11-05 11:18:32 -05:00
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.gitignore build(spaceranger): Add initial dockerfile 2021-11-05 11:18:32 -05:00
Dockerfile build(spaceranger): Add initial dockerfile 2021-11-05 11:18:32 -05:00
README.md build(spaceranger): Add initial dockerfile 2021-11-05 11:18:32 -05:00

README.md

Updating the docker container and making a new module release

Space Ranger is a commercial tool by 10X Genomics. The container provided for the spaceranger nf-core module is not provided nor supported by 10x Genomics. Updating the Space Ranger version in the container and pushing the update to Dockerhub needs to be done manually.

  1. Navigate to the Space Ranger download page and download the tar ball of the desired Space Ranger version with curl or wget. Place this file in the same folder where the Dockerfile lies.

  2. Edit the Dockerfile: update the Cell Ranger version in this line:

    ENV SPACERANGER_VER <VERSION>

  3. Create the container:

    docker build . -t nfcore/spaceranger:<VERSION>
docker push nfcore/spaceranger:<VERSION>