mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
21 lines
889 B
Docker
21 lines
889 B
Docker
FROM continuumio/miniconda3:4.9.2
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LABEL authors="Gisela Gabernet <gisela.gabernet@gmail.com>,Edmund Miller <edmund.a.miller@gmail.com>" \
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description="Docker image containing Space Ranger"
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# Disclaimer: this container is not provided nor supported by 10x Genomics.
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# Install procps and clean apt cache
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RUN apt-get update --allow-releaseinfo-change \
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&& apt-get install -y procps \
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&& apt-get clean -y && rm -rf /var/lib/apt/lists/*
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# Copy pre-downloaded spaceranger file
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ENV SPACERANGER_VER 1.3.0
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COPY spaceranger-$SPACERANGER_VER.tar.gz /opt/spaceranger-$SPACERANGER_VER.tar.gz
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# Install spaceranger
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RUN \
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cd /opt && \
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tar -xzvf spaceranger-$SPACERANGER_VER.tar.gz && \
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export PATH=/opt/spaceranger-$SPACERANGER_VER:$PATH && \
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ln -s /opt/spaceranger-$SPACERANGER_VER/spaceranger /usr/bin/spaceranger && \
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rm -rf /opt/spaceranger-$SPACERANGER_VER.tar.gz
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