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https://github.com/MillironX/nf-core_modules.git
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c99ab09f8d
* Add kraken2 pigz multi-tool container for compressing output fastq files * Add untar to pytest config * Add untar process to kraken2 tests * Remove unneeded tags
29 lines
1 KiB
YAML
29 lines
1 KiB
YAML
- name: kraken2 run single-end
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command: nextflow run ./tests/software/kraken2/run -entry test_kraken2_run_single_end -c tests/config/nextflow.config
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tags:
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- kraken2
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- kraken2/run
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files:
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- path: output/kraken2/test.classified.fastq.gz
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should_exist: true
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- path: output/kraken2/test.unclassified.fastq.gz
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should_exist: true
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- path: output/kraken2/test.kraken2.report.txt
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md5sum: 4227755fe40478b8d7dc8634b489761e
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- name: kraken2 run paired-end
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command: nextflow run ./tests/software/kraken2/run -entry test_kraken2_run_paired_end -c tests/config/nextflow.config
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tags:
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- kraken2
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- kraken2/run
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files:
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- path: output/kraken2/test.classified_1.fastq.gz
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should_exist: true
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- path: output/kraken2/test.classified_2.fastq.gz
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should_exist: true
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- path: output/kraken2/test.unclassified_1.fastq.gz
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should_exist: true
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- path: output/kraken2/test.unclassified_2.fastq.gz
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should_exist: true
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- path: output/kraken2/test.kraken2.report.txt
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md5sum: 4227755fe40478b8d7dc8634b489761e
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