nf-core_modules/tests/software
Jose Espinosa-Carrasco d63ff4ba1b
Add artic guppyplex (#455)
* Adding artic guppyplex module

* Adding guppyplex tests

* Fix tests

* Correcting typo

* Fix lint

* Fix test

* Missing description

* Missing descriptions

* Update functions to last version as suggested

* Bump newest version of nanoplot
2021-04-27 15:57:34 +01:00
..
abacas Move assembly test files from genome to illumina (#441) 2021-04-13 12:52:11 +02:00
adapterremoval remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
allelecounter Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
artic/guppyplex Add artic guppyplex (#455) 2021-04-27 15:57:34 +01:00
bandage/image Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
bcftools Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
bedtools Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
bismark Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
blast Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
bowtie remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
bowtie2 remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
bwa remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
bwamem2 remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
bwameth Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
cat/fastq remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
cnvkit Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
cutadapt remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
deeptools Finish deeptools modules (#442) 2021-04-13 21:48:43 +01:00
dsh Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
fastp remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
fastqc remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
fasttree adding fasttree module (#412) 2021-04-08 18:15:23 +01:00
fgbio Update and check tests are running for all modules (#420) 2021-04-09 13:47:05 +01:00
flash update tests for new config (#384) 2021-04-01 20:22:06 +01:00
gatk4 remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
gffread Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
gubbins Update gubbins module to use new files (#417) 2021-04-09 07:54:11 +01:00
gunzip Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
hisat2 remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
homer/annotatepeaks Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
iqtree add new iqtree module (#427) 2021-04-12 09:45:56 +01:00
ivar Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
kallisto/index Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
kallistobustools/ref remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
kraken2/run Add kraken2 pigz multi-tool container for compressing output fastq files (#434) 2021-04-12 18:47:34 +02:00
mash/sketch 🏋️‍♀️ new submodule mash/sketch🕺 (#426) 2021-04-10 16:24:23 +01:00
methyldackel Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
minia Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
minimap2/align remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
mosdepth update tests for new config (#384) 2021-04-01 20:22:06 +01:00
msisensor Update and check tests are running for all modules (#420) 2021-04-09 13:47:05 +01:00
multiqc Fix some module test after adapting test config approach (#379) 2021-03-24 18:29:41 +00:00
nanoplot Nanoplot and sequencing_summary.txt for Nanopore test data (#364) 2021-04-09 08:31:38 +01:00
optitype update tests for new config (#384) 2021-04-01 20:22:06 +01:00
pangolin Version bumps and minor module updates (#406) 2021-04-06 13:38:41 +01:00
picard remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
plasmidid Bump plasmidid version (#460) 2021-04-26 12:40:38 +02:00
preseq/lcextrap Update modules required for rnaseq pipeline (#449) 2021-04-16 08:56:47 +01:00
prodigal Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
prokka Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
pycoqc Add pycoqc module (#424) 2021-04-12 10:52:14 +01:00
qualimap/bamqc Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
quast remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
rapidnj add rapidnj module (#421) 2021-04-09 13:04:54 +01:00
rasusa 🧸 Updated rasusa (#437) 2021-04-12 21:47:55 +01:00
raxmlng Raxmlng (#443) 2021-04-14 08:38:59 +01:00
rseqc Finish rseqc modules (#439) 2021-04-13 08:49:32 +01:00
salmon remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
samtools Update modules required for rnaseq pipeline (#449) 2021-04-16 08:56:47 +01:00
seacr/callpeak Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
seqkit/split2 remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
sequenzautils Update and check tests are running for all modules (#420) 2021-04-09 13:47:05 +01:00
seqwish/induce Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
shovill remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
snpsites New Snpsites module (#416) 2021-04-09 08:00:33 +01:00
spades remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
star Update modules required for rnaseq pipeline (#449) 2021-04-16 08:56:47 +01:00
strelka/germline Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
stringtie Update and check tests are running for all modules (#420) 2021-04-09 13:47:05 +01:00
subread/featurecounts remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
tabix remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
tiddit/sv remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
trimgalore Fix a bunch of failing tests after switching to test config (#378) 2021-03-24 18:28:54 +00:00
ucsc Add ucsc/bedclip module (#450) 2021-04-15 22:04:59 +02:00
unicycler remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
untar Fix some module tests after switching to config data (#386) 2021-03-24 18:28:07 +00:00
vcftools remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
yara remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00