mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
0954204f9e
* Initial draft [ci skip] * trigger first test * update output file path * Tests passing * finishing touches for meta.yml and update checksum * tweak checksum * add threads to the module * skip version info for matching test md5sum [ci skip] * Add ref fasta and finalize the module Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
45 lines
1.1 KiB
YAML
45 lines
1.1 KiB
YAML
name: bcftools_norm
|
|
description: Normalize VCF file
|
|
keywords:
|
|
- normalize
|
|
- norm
|
|
- variant calling
|
|
- VCF
|
|
tools:
|
|
- norm:
|
|
description: |
|
|
Normalize VCF files.
|
|
homepage: http://samtools.github.io/bcftools/bcftools.html
|
|
documentation: http://www.htslib.org/doc/bcftools.html
|
|
doi: 10.1093/bioinformatics/btp352
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: |
|
|
The vcf file to be normalized
|
|
e.g. 'file1.vcf'
|
|
- fasta:
|
|
type: file
|
|
description: FASTA reference file
|
|
pattern: "*.{fasta,fa}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: VCF normalized output file
|
|
pattern: "*.{vcf.gz}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@abhi18av"
|