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* add csvtk/concat module * Update modules/csvtk/concat/main.nf Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> * allow alternate delimiters * Update main.nf * Update modules/csvtk/concat/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/csvtk/concat/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/csvtk/concat/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/csvtk/concat/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/csvtk/concat/main.nf * Apply suggestions from code review Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
20 lines
663 B
Text
20 lines
663 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { CSVTK_CONCAT } from '../../../../modules/csvtk/concat/main.nf' addParams( options: [:] )
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workflow test_csvtk_concat {
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input = [
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[ id:'test' ], // meta map
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[ file("https://github.com/nf-core/test-datasets/raw/bacass/bacass_hybrid.csv", checkIfExists: true),
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file("https://github.com/nf-core/test-datasets/raw/bacass/bacass_long.csv", checkIfExists: true),
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file("https://github.com/nf-core/test-datasets/raw/bacass/bacass_short.csv", checkIfExists: true) ]
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]
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in_format = "tsv"
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out_format = "csv"
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CSVTK_CONCAT ( input, in_format, out_format )
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}
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