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abacas
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Fixing abacas meta.yml file (#447)
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2021-04-15 11:17:06 +01:00 |
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adapterremoval
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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allelecounter
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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artic/guppyplex
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Add artic guppyplex (#455)
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2021-04-27 15:57:34 +01:00 |
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bandage/image
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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bcftools
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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bedtools
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Fixes for nanoseq modules (#479)
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2021-04-30 15:57:43 +01:00 |
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bismark
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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blast
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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bowtie
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Add default publish_dir for index processes (#428)
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2021-04-10 20:49:09 +01:00 |
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bowtie2
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Add default publish_dir for index processes (#428)
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2021-04-10 20:49:09 +01:00 |
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bwa
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Add default publish_dir for index processes (#428)
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2021-04-10 20:49:09 +01:00 |
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bwamem2
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Add default publish_dir for index processes (#428)
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2021-04-10 20:49:09 +01:00 |
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bwameth
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Add default publish_dir for index processes (#428)
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2021-04-10 20:49:09 +01:00 |
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cat/fastq
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Add default publish_dir for index processes (#428)
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2021-04-10 20:49:09 +01:00 |
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cnvkit
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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cutadapt
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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deeptools
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Finish deeptools modules (#442)
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2021-04-13 21:48:43 +01:00 |
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dshbio
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Update dsh-bio modules to version 2.0.4 (#482)
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2021-05-04 14:28:44 +01:00 |
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fastp
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minor typo (#451)
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2021-04-15 19:45:23 +01:00 |
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fastqc
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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fasttree
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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fgbio
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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flash
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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gatk4
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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gffread
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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graphmap2
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Fixes for nanoseq modules (#479)
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2021-04-30 15:57:43 +01:00 |
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gubbins
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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gunzip
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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hisat2
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Update modules required for rnaseq pipeline (#449)
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2021-04-16 08:56:47 +01:00 |
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hmmer/hmmalign
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New module to use hmmalign from HMMER to align sequences (#470)
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2021-04-28 11:21:24 +01:00 |
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homer/annotatepeaks
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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iqtree
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Iqtree (#435)
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2021-04-12 17:01:26 +01:00 |
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ivar
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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kallisto/index
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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kallistobustools
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Added kallistobustools/count (#409)
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2021-04-30 07:27:17 +02:00 |
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kraken2/run
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Add kraken2 pigz multi-tool container for compressing output fastq files (#434)
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2021-04-12 18:47:34 +02:00 |
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last/lastdb
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New last/lastdb module to index sequences before alignment. (#476)
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2021-05-02 11:36:31 +01:00 |
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lib
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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macs2/callpeak
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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mash/sketch
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🏋️♀️ new submodule mash/sketch🕺 (#426)
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2021-04-10 16:24:23 +01:00 |
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methyldackel
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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minia
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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minimap2
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Fixes for nanoseq modules (#479)
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2021-04-30 15:57:43 +01:00 |
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mosdepth
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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msisensor
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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multiqc
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Move test data to nf-core/test-datasets (#432)
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2021-04-12 12:32:39 +01:00 |
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nanoplot
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Add artic guppyplex (#455)
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2021-04-27 15:57:34 +01:00 |
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optitype
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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pangolin
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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phantompeakqualtools
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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picard
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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plasmidid
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Bump plasmidid version (#460)
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2021-04-26 12:40:38 +02:00 |
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preseq/lcextrap
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Update modules required for rnaseq pipeline (#449)
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2021-04-16 08:56:47 +01:00 |
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prodigal
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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prokka
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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pycoqc
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Add pycoqc module (#424)
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2021-04-12 10:52:14 +01:00 |
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qcat
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Fixes for nanoseq modules (#479)
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2021-04-30 15:57:43 +01:00 |
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qualimap
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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quast
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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rapidnj
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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rasusa
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🧸 Updated rasusa (#437)
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2021-04-12 21:47:55 +01:00 |
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raxmlng
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Raxmlng (#474)
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2021-04-29 08:20:05 +01:00 |
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rsem
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Add default publish_dir for index processes (#428)
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2021-04-10 20:49:09 +01:00 |
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rseqc
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Finish rseqc modules (#439)
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2021-04-13 08:49:32 +01:00 |
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salmon
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Add default publish_dir for index processes (#428)
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2021-04-10 20:49:09 +01:00 |
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samtools
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Update modules required for rnaseq pipeline (#449)
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2021-04-16 08:56:47 +01:00 |
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seacr/callpeak
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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seqkit/split2
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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sequenzautils
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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seqwish/induce
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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shovill
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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snpsites
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output constant sites as a val so it can be passed into iqtree (#429)
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2021-04-10 18:49:35 +01:00 |
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sortmerna
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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spades
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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star
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Update modules required for rnaseq pipeline (#449)
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2021-04-16 08:56:47 +01:00 |
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strelka/germline
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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stringtie
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Add stringtie merge module (from nanoseq modules) (#475)
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2021-05-03 07:18:51 +02:00 |
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subread/featurecounts
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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tabix
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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tiddit/sv
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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trimgalore
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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ucsc
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Add ucsc/bedclip module (#450)
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2021-04-15 22:04:59 +02:00 |
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umitools
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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unicycler
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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untar
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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vcftools
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Update functions.nf to be more flexible for publishing by meta keys (#423)
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2021-04-09 17:23:56 +01:00 |
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yara
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Add default publish_dir for index processes (#428)
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2021-04-10 20:49:09 +01:00 |
e3cf4c822c