| .. |
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abacas
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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adapterremoval
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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agrvate
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module for agrvate (#693)
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2021-09-16 12:42:23 +02:00 |
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allelecounter
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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amps
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add Amps (#768)
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2021-09-30 12:54:16 +02:00 |
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arriba
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Added module arriba (#611)
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2021-07-22 15:19:42 +01:00 |
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artic
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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bamaligncleaner
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Add module: bamaligncleaner (#676)
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2021-09-15 10:31:49 +02:00 |
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bandage/image
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
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bbmap
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Add bbmap/bbsplit module (#771)
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2021-09-30 13:37:35 +01:00 |
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bcftools
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Add bcftools/query module (#670)
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2021-09-14 09:19:01 +02:00 |
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bedtools
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Add bedtools/makewindows module (#658)
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2021-09-07 14:36:06 -04:00 |
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bismark
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
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blast
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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bowtie
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
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bowtie2
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
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bwa
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
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bwamem2
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
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bwameth
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
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cat
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Fix flash and cat/fastq modules (#759)
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2021-09-28 21:14:11 +01:00 |
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chromap
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Chromap Module (#659)
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2021-09-15 17:20:55 +01:00 |
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cnvkit
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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cooler
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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csvtk/concat
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add csvtk/concat module (#785)
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2021-10-05 21:48:47 +01:00 |
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custom/dumpsoftwareversions
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Add custom/dumpsoftwareversions modules for nf-core pipeline template (#761)
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2021-09-29 14:27:00 +01:00 |
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cutadapt
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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damageprofiler
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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deeptools
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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delly/call
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few version and test data config fixes (#758)
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2021-09-28 20:42:04 +01:00 |
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diamond
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Diamond (#710)
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2021-09-23 09:13:04 +01:00 |
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dragonflye
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add module for dragonflye (#633)
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2021-08-16 11:51:30 +02:00 |
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dshbio
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Add dsh-bio export-segments module (#631)
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2021-08-17 15:53:41 +02:00 |
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ensemblvep
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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expansionhunter
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Expansionhunter (#666)
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2021-08-16 17:47:42 +02:00 |
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fastani
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module fastani (#695)
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2021-09-21 20:20:26 +01:00 |
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fastp
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enhance module fastp: add save_merged (#598) (#614)
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2021-07-23 10:44:00 +01:00 |
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fastqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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fasttree
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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fgbio
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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flash
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Fix flash and cat/fastq modules (#759)
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2021-09-28 21:14:11 +01:00 |
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gatk4
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Update for mutect2: add output channel for stats file (#716)
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2021-09-17 09:56:56 +01:00 |
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genmap
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
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gffread
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Fix bug in gffread (#686)
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2021-09-15 19:55:08 +01:00 |
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glnexus
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Add glnexus (#729)
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2021-09-22 13:31:01 +01:00 |
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graphmap2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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gtdbtk/classifywf
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Add gtdbtk/classifywf module (#765)
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2021-10-05 21:23:01 +01:00 |
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gubbins
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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gunzip
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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hicap
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add hicap module (#772)
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2021-10-05 21:42:09 +01:00 |
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hifiasm
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few version and test data config fixes (#758)
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2021-09-28 20:42:04 +01:00 |
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hisat2
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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hmmer/hmmalign
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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homer
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Homer Modules (#75)
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2021-09-08 15:40:34 +00:00 |
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iqtree
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Module new version reporting fixes (#753)
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2021-09-28 10:51:19 +01:00 |
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ismapper
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add ismapper module (#773)
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2021-10-05 21:55:41 +01:00 |
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ivar
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
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kallisto/index
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Fix yml ver (#756)
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2021-09-28 18:33:07 +02:00 |
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kallistobustools
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Fix yml ver (#756)
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2021-09-28 18:33:07 +02:00 |
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kleborate
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Add module kleborate (#711)
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2021-09-21 20:45:42 +01:00 |
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kraken2/kraken2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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last
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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lima
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New module: LIMA (#719)
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2021-09-27 16:14:35 +01:00 |
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lofreq
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fix: lofreq/callparallel missing arg (#562) (#586)
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2021-07-19 09:19:27 +01:00 |
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malt
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update: MALT build version bump (#699)
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2021-09-15 16:46:29 +01:00 |
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maltextract
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add: MALTEXTRACT (#725)
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2021-09-21 19:57:27 +01:00 |
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mash/sketch
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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mashtree
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add mashtree module (#767)
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2021-10-05 21:27:30 +01:00 |
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metaphlan3
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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methyldackel
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
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minia
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
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minimap2
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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mlst
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added classic mlst module (#742)
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2021-10-05 20:49:46 +01:00 |
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mosdepth
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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msisensor
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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multiqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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muscle
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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nanolyse
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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nanoplot
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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nextclade
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Update Nextclade to output all files by default (#638)
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2021-07-28 19:49:50 +01:00 |
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optitype
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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pairix
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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pairtools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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pangolin
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Update pangolin to 3.1.11 (#721)
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2021-09-20 19:59:05 +01:00 |
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pbccs
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new module: pbccs (#688)
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2021-09-16 11:48:18 +01:00 |
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picard
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Module new version reporting fixes (#753)
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2021-09-28 10:51:19 +01:00 |
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plasmidid
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Fix yml ver (#756)
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2021-09-28 18:33:07 +02:00 |
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plink/vcf
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Adding plink/vcf module (#656)
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2021-09-14 08:51:40 +02:00 |
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preseq/lcextrap
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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prodigal
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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prokka
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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pycoqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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pydamage
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Module new version reporting fixes (#753)
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2021-09-28 10:51:19 +01:00 |
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qcat
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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qualimap/bamqc
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
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quast
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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rapidnj
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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rasusa
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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raxmlng
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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roary
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add roary module (#776)
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2021-10-05 22:08:47 +01:00 |
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rsem
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
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rseqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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salmon
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
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samtools
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
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seacr/callpeak
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Fix version commands: round 3 (#754)
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2021-09-28 14:37:47 +01:00 |
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seqkit/split2
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Fix version commands: round 3 (#754)
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2021-09-28 14:37:47 +01:00 |
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seqtk
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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sequenzautils
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Fix version commands: round 3 (#754)
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2021-09-28 14:37:47 +01:00 |
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seqwish/induce
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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shovill
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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snpdists
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module: snp-dists (#697)
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2021-09-15 16:36:49 +01:00 |
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snpeff
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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snpsites
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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spades
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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spatyper
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add spatyper module (#784)
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2021-10-05 22:21:35 +01:00 |
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staphopiasccmec
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add staphopia-sccmec module (#702)
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2021-09-15 17:24:11 +01:00 |
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star
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
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strelka/germline
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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stringtie
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
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subread/featurecounts
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fix more ver yml (#757)
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2021-09-28 20:25:10 +01:00 |
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tabix
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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tiddit/sv
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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trimgalore
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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ucsc
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Fix version commands: round 3 (#754)
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2021-09-28 14:37:47 +01:00 |
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unicycler
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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untar
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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unzip
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Unzip update (#730)
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2021-09-22 11:02:32 +01:00 |
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variantbam
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Add variantbam (#618)
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2021-07-26 19:07:29 +01:00 |
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vcftools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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yara
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fix more ver yml (#757)
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2021-09-28 20:25:10 +01:00 |
e77b3d72f3